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Leader in Integrated ICT Hardware & Systems

Bio Photonics


Professor Stefan Andersson-Engels is recruited as the Group Head of the newly established Biophotonics@Tyndall Group based at the Tyndall National Institute. The Group has been set up with generous financial support and infrastructure support which provides fantastic opportunities for world-class research within biophotonics. The Group’s major focus will be to form close collaborations with clinicians, research centres and companies to accelerate biophotonics technology and rapidly deliver this new technology into the hands of health-care providers. Using photonics as a driver for the faster development and deployment of more accurate, less invasive diagnostic and treatment methods for cancer and other diseases, the ultimate aim of Biophotonics@Tyndall is to radically improve health outcomes for patients.

Prof. Andersson-Engels  has been awarded several prizes for his research achievements. One of his main areas of focus has been the translational research in tumour detection and localisation or delineation of diseased regions. The most cited publication of the PI is from a study introducing ALA-PDT for clinical therapy of non-melanoma skin cancer, something that today is a first-line therapy at most derma-oncological clinics in many countries. As part of one of the pioneering groups in this field, the research conducted at the early stage of the PI’s career was ground-breaking and essential in establishing and forming this now mature field of research. At that time, this achievement was essential as it developed the first portable, health-care adapted biophotonics spectroscopy system that could be employed in translational studies within the medical environment. This translational step has later been identified as a milestone by leaders in the field. Other highlights of the PI’s scientific career include the development and studies of the photon time-of-flight spectroscopy (pTOFS) and the gas in scattering media absorption spectroscopy (GASMAS) techniques. Further important accomplishments include the development of accelerated Monte Carlo algorithms for biomedical optics, and the work on upconverting nanoparticles as a novel contrast agent for biomedical imaging and photoactivation, with many interesting properties.

Internationally, Prof. Andersson-Engels has organised many leading conferences in the field of biomedical optics; both as a general and program co-chair (e.g. a Gordon research conference, ECBO and BIOMED), as subcommittee chair (e.g. CLEO, ECBO, BIOMED and ACP), and as a subcommittee member for many conferences. He is in addition currently engaged in the editorial boards of several scientific journals in biophotonics (JBO, JBP, and J Biomed Photon & Eng.).

At OSA has been a member of the Board of Directors and the chair of the Membership and Education Council. However, the organisational leadership achievement that has made him most renowned in the field of Biomedical Optics is that he is the co-founder and organiser of the international summer school ‘Biophotonics’, given bi-annually since 2003. This school is now considered and recognised as the most prestigious summer school in the biophotonics field by international leaders. Teaching and training the next generation of motivated and talented individuals at all levels has always been a priority for Professor Andersson-Engels. For his teaching achievements, he was awarded the “Lindbomska belöningen” from the Swedish Royal Academy of Sciences in Stockholm. Stefan has also been recognised for his entrepreneurial skills and has received several prizes – including the SKAPA award, the most prestigious entrepreneurship award in Sweden.

The Biophotonics@Tyndall Group research programme will include the following projects, which are divided into application-driven and fundamental research/technology-platform driven tasks.

  • Application-driven tasks: aimed at finding solutions to identified clinical and preclinical challenges. Novel studies and developments will focus on well-known techniques and principles such as diffuse reflectance, fluorescence, Raman and photoacoustics.
  • Fundamental research/Technology-platform tasks: aimed at developing novel biophotonics optical techniques beyond the state-of-the-art, thus providing new techniques that can potentially solve important clinical or pre-clinical questions in the future.

Application driven tasks: Clinical & Preclinical challenges: Several issues will be studied with an application focus, initially with techniques deemed to be the most promising for that particular task, and then, when necessary, complemented with more sophisticated multimodal techniques. The proposed primary targeted medical application projects integrate well with ongoing activities at the various clinics, and aim to translate into clinically evaluated prototypes for patient care. This part of the project will include:

Optical diagnostics and guidance of medical interventions: Many diagnostic procedures, clinical interventions and preclinical studies would tremendously benefit from improved guidance. Five areas of research are included in this proposal:

  • Gastrointestinal interventions (GI) where the challenges can be guiding resections duringe.g. laparoscopic-surgery and treatment of inflammatory bowel disease.
  • Multicentre study for HPV-positive oral cancer screening (ENT) together with NUIG.
  • Reconstructive bone surgery (Bone) where it is essential to keep the periosteum (bone membrane) intact on the lateral side of the bone when making holes for screws.
  • Surgical guidance for resection of malignant lesions in the brain (Brain) where it is difficult to discriminate malignant and surrounding brain tissue during operation.
  • Monitoring of lung function and tissue oxygen saturation in neonatal care of term and premature babies; and probing for diseases in the airways (Lung).

Technology–platform tasks: Deep tissue imaging/therapy with optical contrast:Fundamental biomedical optics research will involve two principally different principles for deep tissue imaging/manipulation with optical contrast:

  • Upconverting nanoparticles (UCNPs).
  • Wavefront engineering based on ultrasound light tagging (USLT) & optical phase-conjugation focusing (OPCF).

A major challenge is the relative poor light penetration in tissue due to high scattering. This also results in limited spatial resolution. The aim is to develop novel techniques for optical imaging deep in tissue with previously unseen spatial resolution:

  • UCNPs: Optical imaging based on UCNPs as a contrast agent. The main focus of the project will initially be the development of novel imaging and tomography schemes, as UCNPs, with their unique properties, can provide improved image qualities and depth sensitivity. In particular we plan to explore the background-free signal and non-linear excitation properties to optimally assess tissue information. Secondly we also intend to utilise UCNPs for deep tissue photo-activation and luminescence microscopy on stained histopathological paraffin sections. The UCNP-mediated activation is of interest as we can potentially reach cells deep into tissue, as the conventionally required blue excitation is transferred to the NIR wavelength region with high penetration in tissue. Today, immunohistochemistry by fluorophore-stained histopathological microscopy requires frozen sections, as the otherwise preferable preparation, formalin fixation and paraffin embedding, gives far too strong background fluorescence. By utilising UCNPs as a staining agent, this background can be totally eliminated, yielding tremendous simplifications in the sample preparation.
  • USLT and OPCF: Ultrasound light tagging and optical phase-conjugation focusing as novel techniques for labeling and focusing light deep into highly scattering tissue. One way to accomplish both these effects is using focused ultrasound as a “guidestar”together with light waveguide engineering. Light scattered in a volume exposed to ultrasound (US) will experience a wavelength shift due to the ultrasound wave. By filtering out only the wavelength-shifted light it is possible to map optical characteristics of tissue with a resolution of the focused ultrasound beam. It has recently been suggested that light can also be focused to locations deep into highly scattering media using USLT. The development of such technique would open up entirely new avenues for biomedical diagnostics and therapy. This would be a non-invasive label-free technique, thus non-toxic and with potentially great clinical impact.